Description

Custom module to Add a new fasta file to an old one and update an associated GTF

Input

name:type
description
pattern

meta:map

Groovy Map containing fasta information

fasta:file

FASTA-format sequence file

*.{fasta,fa}

gtf:file

GTF-format annotation file for fasta

*.gtf

meta2:map

Groovy Map containing additional fasta information

add_fasta:file

FASTA-format file of additional sequences

*.fa

biotype:string

Biotype to apply to new GTF entries

Output

name:type
description
pattern

fasta

meta:map

Groovy Map containing fasta information

*/*.fasta:file

FASTA-format combined sequence file

*.{fasta,fa}

gtf

meta:map

Groovy Map containing fasta information

*/*.gtf:file

GTF-format combined annotation file

*.gtf

versions

versions.yml:file

File containing software versions

versions.yml

Tools

custom
MIT

Custom module to Add a new fasta file to an old one and update an associated GTF

https://github.com/nf-core/modules/blob/master/modules/nf-core/custom/catadditionalfasta/main.nf
included in
lncpipereferencesriboseqrnaseq
maintainer
Github user pinin4fjords
get in touch
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